An analog to digital converter controls bistable transfer competence of a widespread integrative and conjugative element
Nicolas CarraroiD, Xavier RichardiD, Sandra SulseriD, François DelavatiD, Christian MazzaiD, Jan Roelof van der MeeriD
Abstract
Conjugative transfer of the integrative and conjugative element ICEclc in Pseudomonas requires development of a transfer competence state in stationary phase, which arises only in 3-5% of individual cells. The mechanisms controlling this bistable switch between non-active and transfer competent cells have long remained enigmatic. Using a variety of genetic tools and epistasis experiments in P. putida, we uncovered an upstream cascade of three consecutive transcription factor-nodes, which controls transfer competence initiation. Initiation activates a feedback loop, which stochastic modeling and experimental data demonstrated acts as a scalable converter of unimodal input to bistable output. The feedback loop further enables prolonged production of a transcription factor that ensures downstream transfer competence formation in activated cells. Phylogenetic analyses showed that the ICEclc regulatory factors are widespread among Gamma- and Beta-proteobacteria, highlighting its evolutionary conservation and prime importance to control the behaviour of this wide family of conjugative elements.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 18
- FWCI
- 1.17
- Field percentile
- top 23%
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A four-step regulatory cascade controls bistable transfer competence development of the integrative and conjugative element ICEclc in Pseudomonas
J. R. van der Meer, N. Carraro, … C. Mazza·bioRxiv·Dec 20, 2019
- Orchestrated long-distance gene activation by a ParB-like BisD-CTP DNA clamp in low-frequency transfer competence development in Pseudomonas putida
Hammam Antar, Nicolas Carraro, … Jan Roelof van der Meer·Nucleic Acids ResearchPeer-reviewed·Aug 11, 2025
- A bistable orthogonal prokaryotic differentiation system underlying development of conjugative transfer competence
S. Sulser, A. Vucicevic, … J. R. van der Meer·bioRxiv·Nov 30, 2021
- Horizontal transfer of ICEclc-like elements in Pseudomonas aeruginosa clinical isolates
Valentina Benigno, Nicolas Carraro, … Jan Roelof van der Meer·Journal of BacteriologyPeer-reviewed·Jun 12, 2026
- Transient Replication in Specialized Cells Favors Conjugative Transfer of a Selfish DNA Element
F. Delavat, R. Moritz, J. R. van der Meer·bioRxiv·Oct 25, 2018
- Dynamics of bacterial cell proliferation inhibited by specific proteins for effective horizontal transmission of the integrative and conjugative element ICEclc
Sotaro Takano, Akiko Koto, Ryo Miyazaki·bioRxiv·Jan 4, 2019