Neurology GeneticsGenetic & Genomic MedicinePeer-reviewed journal article
Questioning the association of the STMN2 dinucleotide repeat with ALS
Jay P. RossiD, Fulya AkçimeniD, Calwing LiaoiD, Dan SpiegelmaniD, Ben WeisburdiD, Nicolas DupréiD, Patrick A. DioniD, Guy Armand RouleauiD, Sali M.K. FarhaniD
Abstract
Lowered expression of STMN2 is associated with TDP-43 pathology in amyotrophic lateral sclerosis (ALS). Recently, the number of dinucleotide CA repeats in an intron of the STMN2 gene was reported to be associated with increased risk for ALS. Here, we used a case-control cohort of whole genome sequencing (WGS) as well as WGS from populations in the gnomAD cohort to attempt to replicate this proposed association. We find that repeats well above the previously reported pathogenic threshold of 19 are commonly observed in unaffected individuals across different populations. Further, we did not observe an association between longer STMN2 CA repeats and ALS phenotype. In summary, our results do not support a role of STMN2 CA repeats towards ALS risk. DisclosuresNone to disclose
- organism: human
- assay: whole-genome sequencing
- research focus: variant effect prediction
- approach: statistical model
- Citations
- 3
- FWCI
- 0.26
- Field percentile
- top 47%
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