A NEW BIOINFORMATIC TOOL TO INTERPRET METAGENOMICS /METATRANSCRIPTOMICS RESULTS BASED ON THE GEOMETRY OF THE CLUSTERING NETWORK AND ITS DIFFERENTIALLY GENE ONTOLOGIES (GANGO)
Toni Monleón-GetinoiD, Andreu Paytuví-GallartiD, Walter SanseverinoiD, Javier MéndeziD
Abstract
High-throughput experimental techniques, such as metagenomics or metatranscriptomics, produce large amounts of data, which interpretation and conversion into understandable knowledge can be challenging and out of reach. We present GANGO, a new algorithm based on the ecological concept of consortium (groups biologically connected) and by using clustering network analysis, gene ontologies and powerful hypothesis test allows the identification and interpretation of complex ecological networks, allowing the identification of the relationship between taxa/genes, the number of groups, their relations and their functionalities using the annotated genes of an organism in a database (e.g. UniProt or Ensembl). Three examples of the use of GANGO are shown: a simulated mixture of fungi and bacteria, alterations in soil fungi communities after a diesel-oil spill and genomic changes in Saccharomyces cerevisae due to abiotic stress.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 3
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- MegaGO: a fast yet powerful approach to assess functional similarity across meta-omics data sets
Pieter Verschaffelt, Tim Van Den Bossche, … Bart Mesuere·Journal of Proteome ResearchPeer-reviewed·Mar 4, 2021
- Gist: an ensemble approach to the taxonomic classification of metatranscriptomic sequence data.
Samantha Halliday, John Parkinson·bioRxiv·Oct 28, 2016
- MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks
Ye Peng, Shanmei Tang, … Junhua Li·GigaSciencePeer-reviewed·Oct 2, 2018
- ganon2: up-to-date and scalable metagenomics analysis
Vitor C. Piro, Knut Reinert·NAR Genomics and BioinformaticsPeer-reviewed·Jul 4, 2025
- MetaMeta: Integrating Metagenome Analysis Tools To Improve Taxonomic Profiling
Vitor C. Piro, Marcel Matschkowski, Bernhard Y. Renard·MicrobiomePeer-reviewed·Aug 14, 2017
- Metalink: Joint taxonomic and functional profiling of metagenomes and metatranscriptomes across resolution scales
Liuyang Li, Yinzhao Wang·bioRxiv·Oct 18, 2026