bioRxivBioinformaticsPreprint
Revealing trajectories of multi-modal voxel-level changes in neurodegenerative diseases using latent event mapping
Sanduni PinnawalaiD, Annabelle HartantoiD, Misha Jairamani, Ivor SimpsoniD, Peter A WijeratneiD
Abstract
Neurodegenerative diseases are driven by pathological mechanisms that can be indirectly measured in vivo using multi-modal neuroimaging. However, current computational methods that aim to reconstruct trajectories of voxel-level changes in the brain are either not computationally scalable or fully interpretable, limiting their ability to reveal associations between disease progression and underlying mechanisms. Here we introduce Latent Event Mapping (LEMING), a generative unsupervised modelling technique that learns a latent map of disease events along a common pseudo-timeline of events. We apply LEMING to amyloid PET and structural MRI data from the Alzheimers Disease Neuroimaging Initiative to reveal the first voxel-level trajectories of events in Alzheimers disease. Notably, we show how LEMING can provide new insights into progression-dependent disease mechanisms. We find that acetylcholine receptor density is significantly positively associated with both late-stage amyloid and atrophy events, suggesting that either these receptors are targeted later in disease progression, or that amyloid does not play an active role. This has strong implications for therapeutics that target acetylcholine receptors, particularly for early-stage intervention strategies.
- organism: human
- assay: spatial transcriptomics
- assay: imaging
- research focus: trajectory inference
- research focus: differential expression
- research focus: cell-cell communication
- research focus: gene regulatory network inference
- approach: statistical model
- Citations
- 0
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