Sign in
BioinformaticsPLoS ONE
Peer-reviewed journal article

Microbial Community Dissimilarity for Source Tracking with Application in Forensic Studies

Kyle M. Carter, Meng Lu, Qianwen LuoiD, Hongmei Jiang, Lingling AniD

Abstract

Microbial source-tracking is a useful tool for trace evidence analysis in Forensics. Community-wide massively parallel sequencing profiles can bypass the need for satellite microbes or marker sets which are unreliable when handling unstable samples. We propose a method utilizing Aitchison distance to select important suspects/sources and then propose several methods to estimate the proportions of microbial communities/samples coming from important suspects/sources. A series of comprehensive simulation studies show that these methods are capable of accurate selection and improve the performance of current methods Bayesian SourceTracker and FEAST in the presence of noise microbial sources.

02 /Specification & Classification

Click any tag to browse matching papers
Citations
16
FWCI
0.97
Field percentile
top 28%

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.