bioRxivBiophysicsPreprint
Lattice-based microenvironmental uncertainty driven phenotypic decision-making: a comparison with Notch-Delta-Jagged signaling
A. A. Pujar, A. Barua, D. Singh, U. Roy, M. K. Jolly, H. Hatzikirou
Abstract
Phenotypic decision-making is a process of determining important phenotypes in accordance with the available microenvironmental information. Although phenotypic decision at the level of a single cell has been precisely studied, but the knowledge is still imperceptible at the multicellular level. How cells sense their environment and adapt? How single cells change their phenotype in a multicellular complex environment (without knowing the interactions among the cells), is still a rheotorical question. To unravel the fragmental story of multicellular decision-making, Least microEnvironmental Uncertainty Principle (LEUP) was refined and applied in this context. To address this set of questions, we use variational principle to grasp the role of sensitivity, build a LEUP driven agent-based model on a lattice which solely hinges on microenvironmental information and investigate the parallels in a well-known biological system, viz., Notch-Delta-Jagged signaling pathway. The analyses of this model led us to interesting spatiotemporal patterns in a population of cells, responsive to the sensitivity parameter and the radius of interaction. This resembles the tissue-level pattern of a population of cells interacting via Notch-Delta-Jagged signaling pathway in some parameter regimes.
- research focus: cell type annotation
- research focus: clustering
- research focus: spatial domain detection
- approach: deep learning
- approach: statistical model
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