bioRxivNeurosciencePreprint
Reducing false positives in tractography with microstructural and anatomical priors
Simona SchiaviiD, Muhamed Barakovic, Mario Ocampo-Pineda, Maxime DescoteauxiD, Jean-Philippe Thiran, Alessandro DaducciiD
Abstract
Tractography is a family of algorithms that use diffusion-weighted magnetic resonance imaging data to reconstruct the white matter pathways of the brain. Although it has been proven to be particularly effective for studying non-invasively the neuronal architecture of the brain, recent studies have highlighted that the large incidence of false positive connections retrieved by these techniques can significantly bias any connectivity analysis. Some solutions have been proposed to overcome this issue and the ones relying on convex optimization framework showed a significant improvement. Here we propose an evolution of the Convex Optimization Modeling for Microstructure Informed Tractography (COMMIT) framework, that combines basic prior knowledge about brain anatomy with group-sparsity regularization into the optimization problem. We show that the new formulation dramatically reduces the incidence of false positives in synthetic DW-MRI data.
- assay: multiome
- research focus: trajectory inference
- approach: statistical model
- approach: optimal transport
- Citations
- 18
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Incorporating outlier information into diffusion MR tractogram filtering for robust structural brain connectivity and microstructural analyses
Viljami Sairanen, Mario Ocampo‐Pineda, … Alessandro Daducci·NeuroImagePeer-reviewed·Dec 9, 2021
- Track-To-Learn: A general framework for tractography with deep reinforcement learning
Antoine Théberge, Christian Desrosiers, … Pierre‐Marc Jodoin·Medical Image AnalysisPeer-reviewed·May 3, 2021
- Tractography-based connectomes are dominated by false-positive connections
Klaus Hermann Maier-Hein, Peter Neher, … Maxime Descoteaux·Nature CommunicationsPeer-reviewed·Nov 1, 2017
- HARP: Hierarchical Anatomical Refinement of Pathways for Whole-Brain Tractography
Simona Leserri, Kathleen S. Rockland, Dogu Baran Aydogan·bioRxiv·May 30, 2026
- Anatomically informed multi-level fiber tractography
Andrey Zhylka, Alexander Leemans, … Alberto De Luca·Magnetic Resonance Materials in Physics Biology and MedicinePeer-reviewed·Jul 29, 2022
- Limits to anatomical accuracy of diffusion tractography using modern approaches
Kurt G. Schilling, Vishwesh Nath, … Bennett A. Landman·NeuroImagePeer-reviewed·Oct 11, 2018