bioRxivScientific Communication & EducationPreprint
Characteristics and data reporting of rare disease clinical trials: Getting better but still room for improvement
N. K. Mair, J. Gottowik, R. Rodriguez-Esteban, T. J. Seabrook
Abstract
BackgroundIt is estimated that there are more than 7,000 rare diseases (RDs) worldwide, impacting the lives of approximately 400 million people and only 5% have an approved therapy. Facing special challenges, including patient scarceness, incomplete knowledge of the natural history and only few specialized clinical sites, clinical trials (CT) are limited, making the data from trials critical for research and clinical care. Despite the introduction of the U.S. Food and Drug Administration Amendment Act (FDAAA) in 2007 requiring certain CTs to post results on the registry ClinicalTrials.gov within 12 months following completion, compliance has been reportedly poor. Here, we describe general characteristics of RD CTs, identify trends, and evaluate result reporting practices under the FDAAA aiming to draw awareness to the problem of non-compliance. MethodsCTs conducted between 2008 and 2015 were extracted from the public U.S. trial registry ClinicalTrials.gov using the text mining software I2E (Linguamatics). Disease names were matched with rare disease names from the Orphanet Rare Disease Ontology (ORDO, v2.5, Orphanet). Statistical analyses and data visualization were performed using GraphPad Prism 7 and R (v3.5). The Students t-test was employed to calculate significance using p-value cut-offs of <0.05 or <0.001. ResultsWe analyzed 1,056 RD CTs of which 55.7% were phase 2, 7.7% phase 2/3 and 36.7% phase 3 trials. The studies were mostly one- and two-armed experimental CTs with the majority (60.2%) being funded by industry. Cystic fibrosis and sickle cell disease represented the most frequently investigated diseases (25.0% and 16.5%). Industry-led phase 2 RD CTs were significantly (p<0.0001) shorter than their equivalent led by academia/non-profit (22 vs. 33 months). Screening CTs completed before the end of 2015, we found that of the 725 analyzed studies, 55.2% predominantly phase 2 CTs, did not report results. Taking their potential applicability to the FDAAA into account, 25.2% industry-funded and 28.0% academia/non-profit-funded trials failed to disclose results on ClinicalTrial.gov. ConclusionRD CTs tend to be comparatively small, industry-funded studies focusing on genetic and neurologic conditions. Sponsor-related differences in study design, duration, and enrollment were observed. There are still substantial shortcomings when it comes to result publication.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Commitments by the biopharmaceutical industry to clinical trials transparency: the evolving environment
S. Baronikova, J. Purvis, … A. Panayi·bioRxiv·Nov 12, 2018
- Developing best practice rare disease diagnostic care models in a real-world rural/regional setting
Lauren S. Akesson, Sanjoti Parekh, … Mathew Wallis·medRxiv·Jul 24, 2025
- A survey of Rare Disease awareness among healthcare professionals and researchers in India
L. Vashishta, P. Bapat, … S. Sheth·bioRxiv·Mar 31, 2023
- Uncovering Medical Insights from Vast Amounts of Biomedical Data in Clinical Case Reports
Yijiang Zhou, David A. Liem, … Peipei Ping·bioRxiv·Aug 4, 2017
- Delivering on the Vision of Bench to Bedside: A Rare Disease Funding Community Collaboration to Develop Effective Therapies for Neurofibromatosis Type 1 Tumors
S. La Rosa, V. Browder, … N. Bora·bioRxiv·Feb 19, 2019
- Dissecting the functional landscape of rare diseases through genomic variation in a heterogeneous cohort of 11,000 patients
Graciela Uría-Regojo, Lidia Fernández‐Caballero, … Pablo Mínguez·medRxiv·Jul 14, 2026