bioRxivEcology
Gene flow from Fraxinus cultivars into natural stands of Fraxinus pennsylvanica occurs range-wide, is regionally extensive, and is associated with a loss of allele richness
E. A. Abhainn, D. L. Shirley, R. K. Stanley, T. Scarpato, J. L. Koch, J. Romero-Severson
Abstract
In North America, the ubiquitous planting of a comparatively small number of Fraxinus (ash) cultivars in both urban and rural environments over the last 70-80 years may have permitted extensive gene flow into naturally regenerated stands. In the light of multiple biotic threats to the North American Fraxinus, an assessment of the extent of gene flow from ash cultivars and the current state of genetic diversity in F. pennsylvanica (green ash), one of the most widely distributed species, is needed to inform seed collection strategies for the preservation of genetic diversity range-wide. We used 16 EST-SSR markers to genotype 1291 trees from 48 naturally regenerated populations of green ash across the native range, 19 F. pennsylvanica cultivars and one F. americana (white ash) cultivar. We detected first generation cultivar parentage with high confidence in 172 individuals in 34 of the 48 populations and extensive cultivar parentage (23-50%) in eight populations. The incidence of cultivar parentage was negatively associated with allele richness (R2 = 0.151, p = 0.006). The high frequency of cultivar propagule dispersal in our study suggests that a significant proportion of the standing genetic variation in local populations may not be of local origin, a result that has serious implications for the study of adaptive variation and the conservation of the Fraxinus gene pool.
- assay: DNA methylation
- research focus: genome assembly
- research focus: variant calling
- research focus: gene regulatory network inference
- research focus: clustering
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- The first genetic linkage map for Fraxinus pennsylvanica and syntenic relationships with four related species
D. Wu, J. Koch, … J. E. Carlson·bioRxiv·Jul 9, 2018
- Identification of full-sibling families from natural single-tree ash progenies based on SSR markers and genome-wide SNPs
Melina Krautwurst, Franziska Past, … Niels A. Müller·Journal of Plant Diseases and ProtectionPeer-reviewed·Sep 11, 2024
- Genetic barcodes for ash (Fraxinus) species and generation of new wide hybrids
W. Plumb, L. Kelly, … R. Buggs·PLANTS, PEOPLE, PLANETPeer-reviewed·Jul 21, 2025
- Genomics-driven monitoring of Fraxinus latifolia (Oregon Ash) for conservation and EAB-resistance breeding
Anthony E. Melton, Trevor M. Faske, … Jill A. Hamilton·bioRxiv·Aug 22, 2024
- Climate gradients drive the evolution of seed morphology and life history with impacts to seedling fitness in Fraxinus nigra
Kyra LoPiccolo, Jacob D. Mazza, … Jill A. Hamilton·bioRxiv·Apr 18, 2026
- Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic
C. L. Metheringham, W. Plumb, … R. A. Nichols·bioRxiv·Aug 1, 2022