bioRxivDevelopmental BiologyPreprint
Enhancing Embryo Stage Classification with Multi-Focal Plane Imaging and Deep Learning
Aissa Benfettoume Souda, Wistan MarchadouriD, Souaad Hamza-CherifiD, Jean-Marie GuyaderiD, Marwa Elbouz, Fréderic Morel, Aurore Perrin, Mohammed El Amine BechariD, Nesma SettoutiiD
Abstract
PurposeAccurately identifying embryo developmental stages is crucial for improving success rates in in vitro fertilization (IVF). Traditional embryo assessment relies on 2D imaging with a single focal plane, which may overlook critical morphological details and lead to misclassification. This study investigates whether incorporating depth information through multi-focal plane imaging can enhance the accuracy of embryo stage classification. MethodsWe compared 2D and 3D convolutional neural network (CNN) architectures trained on a time-lapse embryo dataset containing seven focal planes. The models were evaluated based on their classification performance across different embryo developmental stages. Additionally, we used Gradient-weighted Class Activation Mapping (Grad-CAM) to analyze model attention and interpretability. ResultsThe findings demonstrate that 3D CNN models leveraging multi-focal plane data significantly outperform their 2D counterparts, particularly in complex stages such as Morula formation (tM) and expanded blastocyst (tSB, tB, and tEB). Grad-CAM visualization confirms that the models focus on relevant morphological structures, further validating the advantages of volumetric modeling. ConclusionMulti-focal plane imaging enhances embryo stage classification accuracy by providing richer morphological information. This study underscores the potential of volumetric modeling in embryo assessment and paves the way for extending this approach to full 3D time-lapse analysis.
- assay: imaging
- research focus: cell type annotation
- research focus: clustering
- research focus: dimensionality reduction
- approach: deep learning
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A Dataset for Deep Learning based Cleavage-stage Blastocyst Prediction with Time-lapse Images
Sijia Wang, Jing Fan, … David Yiu Leung Chan·bioRxiv·Dec 26, 2023
- Automatic Ploidy Prediction and Quality Assessment of Human Blastocyst Using Time-Lapse Imaging
Suraj Rajendran, Matthew Brendel, … Iman Hajirasouliha·Nature CommunicationsPeer-reviewed·Sep 5, 2024
- Deep learning methods to forecasting human embryo development in time-lapse videos
A. Sharma, A. Dorobantiu, … H. L. Hammer·bioRxiv·Mar 4, 2024
- Deep learning pipeline reveals key moments in human embryonic development predictive of live birth in IVF
Camilla Mapstone, Helen R. Hunter, … Berenika Płusa·bioRxiv·Jun 27, 2023
- Harnessing cytoplasmic particles movement of the human early embryo analysed by advanced imaging and artificial intelligence to predict development to blastocyst stage
Giovanni Coticchio, Giulia Fiorentino, … Maurizio Zuccotti·Reproductive BioMedicine OnlinePeer-reviewed·Dec 24, 2020
- Accurate staging of chick embryonic tissues via deep learning
Ian Groves, Jacob Holmshaw, … Alexander George Fletcher·bioRxiv·Feb 18, 2022