Nature CommunicationsDevelopmental BiologyPeer-reviewed journal article
Automatic Ploidy Prediction and Quality Assessment of Human Blastocyst Using Time-Lapse Imaging
Suraj RajendraniD, Matthew BrendeliD, Josue Barnes, Qiansheng ZhaniD, Jonas E. MalmsteniD, Pantelis ZisimopoulosiD, Alexandros SigarasiD, Kwabena Ofori-Atta, Marcos MesegueriD, Kathleen A. MilleriD, David I. Hoffman, Zev Rosenwaks, Olivier ElementoiD, Nikica ZaninovićiD, Iman HajirasoulihaiD
Abstract
Assessing fertilized human embryos is crucial for in vitro-fertilization (IVF), a task being revolutionized by artificial intelligence and deep learning. Existing models used for embryo quality assessment and chromosomal abnormality (ploidy) detection could be significantly improved by effectively utilizing time-lapse imaging to identify critical developmental time points for maximizing prediction accuracy. Addressing this, we developed and compared various embryo ploidy status prediction models across distinct embryo development stages. We present BELA (Blastocyst Evaluation Learning Algorithm), a state-of-the-art ploidy prediction model surpassing previous image- and video-based models, without necessitating subjective input from embryologists. BELA uses multitask learning to predict quality scores that are used downstream to predict ploidy status. By achieving an AUC of 0.76 for discriminating between euploidy and aneuploidy embryos on the Weill Cornell dataset, BELA matches the performance of models trained on embryologists manual scores. While not a replacement for preimplantation genetic testing for aneuploidy (PGT-A), BELA exemplifies how such models can streamline the embryo evaluation process, reducing time and effort required by embryologists.
- Citations
- 31
- FWCI
- 12.84
- Field percentile
- top 1%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Robust Automated Assessment of Human Blastocyst Quality using Deep Learning
Pegah Khosravi, Ehsan Mohamad Kazemi, … Iman Hajirasouliha·bioRxiv·Aug 20, 2018
- Harnessing cytoplasmic particles movement of the human early embryo analysed by advanced imaging and artificial intelligence to predict development to blastocyst stage
Giovanni Coticchio, Giulia Fiorentino, … Maurizio Zuccotti·Reproductive BioMedicine OnlinePeer-reviewed·Dec 24, 2020
- Deep learning methods to forecasting human embryo development in time-lapse videos
A. Sharma, A. Dorobantiu, … H. L. Hammer·bioRxiv·Mar 4, 2024
- A Dataset for Deep Learning based Cleavage-stage Blastocyst Prediction with Time-lapse Images
Sijia Wang, Jing Fan, … David Yiu Leung Chan·bioRxiv·Dec 26, 2023
- deepBlastoid: A Deep Learning-Based High-Throughput Classifier for Human Blastoids Using Brightfield Images with Confidence Assessment
- Deep learning pipeline reveals key moments in human embryonic development predictive of live birth in IVF
Camilla Mapstone, Helen R. Hunter, … Berenika Płusa·bioRxiv·Jun 27, 2023