Nature CommunicationsEvolutionary BiologyPeer-reviewed journal article
Time-resolved oxidative signal convergence across the algae-embryophyte divide
T. P. Rieseberg, A. Dadras, T. Darienko, S. Post, C. Herrfurth, J. M. Fuerst-Jansen, N. Hohnhorst, R. Petroll, S. A. Rensing, T. Proeschold, S. de Vries, I. Irisarri, I. Feussner, J. de Vries
Abstract
The earliest land plants faced a significant challenge in adapting to environmental stressors. Stress on land is unique in its dynamics, entailing swift and drastic changes in light and temperature. While we know that land plants share with their closest streptophyte algal relatives key components of the genetic makeup for dynamic stress responses, their concerted action is little understood. Here, we combined time-course stress profiling using photophysiology, transcriptomics on 2.7 Tbp of data, and metabolite profiling analyses on more than 270 distinct samples, to study stress kinetics across three 600-million-year-divergent streptophytes. Through co-expression analysis and Granger causal inference we predict a gene regulatory network that retraces a web of ancient signal convergence at ethylene signaling components, osmosensors, and chains of major kinases. These kinase hubs already integrated diverse environmental inputs since before the dawn of plants on land.
- assay: bulk RNA-seq
- assay: metabolomics
- research focus: gene regulatory network inference
- approach: statistical model
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