S. de Vries

Time-resolved oxidative signal convergence across the algae-embryophyte divide

The paper studies stress response kinetics in early land plants and their algal relatives using multi-omics data to infer ancient gene regulatory networks.

Phylogenomic insights into the first multicellular streptophyte

This study presents a phylogenomic analysis of Klebsormidiophyceae, revealing a novel four-order system and estimating the origin of the first multicellular streptophytes over 900 million years ago.

Fern cell walls and the evolution of arabinogalactan-proteins in streptophytes

This study characterizes arabinogalactan-proteins (AGPs) in ferns, revealing structural differences from seed plants and suggesting evolutionary trends in cell wall composition.

Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution

The paper sequenced four Zygnematophyceae algal genomes to study signaling network evolution, finding expanded genes for multicellularity and environmental response.

Environmental gradients reveal stress hubs predating plant terrestrialization

The paper uses RNAseq and photophysiological data from Mesotaenium under environmental stress to identify stress response hubs in algae, suggesting ancient molecular programs predating plant terrestrialization.

A phylogenomically informed five-order system for the closest relatives of land plants

The paper presents a new five-order system for Zygnematophyceae based on phylogenomic analysis of a filamentous green alga, revealing five independent origins of filamentous growth.

A motor-based approach to induce chromosome-specific mis-segregations in human cells

This paper introduces a motor-based method to induce chromosome-specific mis-segregations in human cells, revealing how spindle forces can cause aneuploidies.

Underwater CAM photosynthesis elucidated by Isoetes genome

This study investigates underwater CAM in Isoetes taiwanensis using genome and RNA-seq data, identifying key differences in carboxylation and circadian control compared to terrestrial CAM.

The evolution of the phenylpropanoid pathway entailed pronounced radiations and divergences of enzyme families

This study shows that enzyme families in the phenylpropanoid pathway underwent radiations and divergences in land plants and their algal relatives, suggesting evolutionary versatility in specialized metabolism.

An ancient route towards salicylic acid and its implications for the perpetual Trichormus-Azolla symbiosis

The paper identifies salicylic acid (SA) in Azolla filiculoides and shows its role in a feedback loop with cyanobacteria, supporting the perpetual nature of their symbiosis.

Comparative analyses of saprotrophy in Salisapilia sapeloensis and diverse plant pathogenic oomycetes reveal lifestyle-specific gene expression

This study compares gene expression between saprotrophic oomycete Salisapilia sapeloensis and plant pathogenic oomycetes to identify lifestyle-specific regulatory patterns.

Multi-plane Imaging of Neural Activity From the Mammalian Brain Using a Fast-switching Liquid Crystal Spatial Light Modulator

The paper introduces a new two-photon microscope using a liquid crystal spatial light modulator to record neural activity in awake mice, finding heterogeneous responses in excitatory neurons across cortical layers.

Broad-spectrum inhibition of Phytophthora infestans by root endophytes

The paper tests fungal endophytes for their ability to inhibit Phytophthora infestans and identifies a promising candidate with broad-spectrum activity.

Genome-Wide Fitness Analyses of the Foodborne Pathogen Campylobacter jejuni in In Vitro and In Vivo Models

This study identifies genes essential for Campylobacter jejuni growth and survival across multiple in vitro and in vivo conditions using transposon sequencing.