bioRxivEcologyPreprint
Robust characterization of forest structure from airborne laser scanning - a systematic assessment and sample workflow for ecologists
Abstract
O_LIForests display tremendous structural diversity, shaping carbon cycling, microclimates, and terrestrial habitats. One of the most common tools for forest structure assessments are canopy height models (CHMs): maps of canopy height obtained at high resolution and large scale from airborne laser scanning (ALS). CHMs can be computed in many ways, but little is known about the robustness of different CHM algorithms and how they affect ecological analyses. C_LIO_LIHere, we used high-quality ALS data from nine sites in Australia, ranging from semi-arid shrublands to 90-m tall Mountain Ash canopies, to comprehensively assess CHM algorithms. This included testing their sensitivity to point cloud degradation and quantifying the propagation of errors to derived metrics of canopy structure. C_LIO_LIWe found that CHM algorithms varied widely both in their height predictions (differences up to 10 m, or 60% of canopy height) and in their sensitivity to point cloud characteristics (biases of up to [~]5 m or 40% of canopy height). Impacts of point cloud properties on CHM-derived metrics varied, from robust inference for height percentiles, to considerable errors in aboveground biomass estimates ([~]50 Mg ha-1, or 10% of total), and high volatility in metrics that quantify spatial associations in canopies (e.g., gaps or spatial autocorrelation). In some cases, biases exceeded ecological variation across sites by a factor of 2. However, we also found that two CHM algorithms - a variation on a "spikefree" algorithm that adapts to local pulse densities and a simple Delaunay triangulation of first returns - allowed for robust canopy characterization and should thus create a secure foundation for ecological comparisons in space and time. C_LIO_LICanopy height models are a widely used tool in ecology, but their derivation is not trivial. Our study provides a best-practice guideline and a sample workflow to create robust CHMs and minimize biases and uncertainty in downstream analyses. In doing so we pave the way for global-scale comparisons of forest structural complexity from airborne laser scanning. C_LI
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A 0.6-meter resolution canopy height model for the contiguous United States
Scott L. Morford, Brady Allred, … David E. Naugle·Scientific DataPeer-reviewed·Jun 5, 2026
- Tree segmentation in airborne laser scanning data is only accurate for canopy trees
Y. Cao, J. G. C. Ball, … T. D. Jackson·bioRxiv·Nov 29, 2022
- Effects of point density on interpretability of lidar-derived forest structure metrics in two temperate forests
C. Swanson, T. Merrick, … R.-R. Li·bioRxiv·Jan 11, 2024
- The Global Canopy Atlas: analysis-ready maps of 3D structure for the world's woody ecosystems
Fabian Jörg Fischer, Rebecca Banbury Morgan, … Ronald Vernimmen·bioRxiv·Aug 31, 2025
- SatCHM (Satellite Canopy Height Model): Leveraging deep learning for site-specific sub-meter canopy height predictions
Mia Mitchell, Charles J. Abolt, … Adam Lee Atchley·bioRxiv·Aug 27, 2026
- Canopy height model and NAIP imagery pairs across CONUS
Brady Allred, Sarah E. McCord, Scott L. Morford·Scientific DataPeer-reviewed·Feb 22, 2025