Optimized real-time qPCR assays for detecting and quantifying the Fusarium and Microdochium species responsible for wheat head blight, as defined by MIQE guidelines

In order to better understand the Fusarium head blight disease, reliable real-time PCR assays for detection and quantification of fungal species belonging to the Fusarium and Microdochium genus are needed. Specific qPCR assays were developed for nine of those species. All criteria required for reproducing the assays are presented. The assays were species specific and allow quantification of at least 5 pg of fungal DNA and detection of 0.5 pg of fungal DNA per PCR reaction. Moreover we showed that the quantification performances of the tests were not altered in the presence of DNA of closely related species in the sample. The assays were tested on field samples and have been already used in greenhouse experiments.