bioRxivAnimal Behavior & CognitionPreprint
Discovering compositional, interpretable structure in social behavior
Yue Wan, Sai Koukuntla, Ahmed El Hady, Mikio Christian Aoi, Adam CharlesiD
Abstract
Quantitative assessment of behavior is vital for rigorous analysis of how animals interact in the world and how behavior is generated from brain activity. Recent advances in automated pose detection have made possible data-driven discovery of movement action sequences. While many algorithms have been developed for this purpose, their categorical nature, i.e., the assumption that behavior is one action at a time, prohibits expressive quantification of social behavior. Such behavior is combinatorial and compositional, with multiple animals performing actions that may be either independent or coordinated over time. Here we show how developments in decomposed linear dynamical systems (dLDS) can instead represent action-generating dynamics as a signed, graded mixture of shared linear operators acting directly on keypoint positions. We demonstrate our approach across both single-mouse and two-mouse datasets, comparing against a state-of-the-art switching model, keypoint-MoSeq. In single-mouse data, we find that a composition of three operators can capture the full repertoire of 21 keypoint-MoSeq syllables, showing that even for a single animal, the action space is more parsimoniously described by a continuous subspace than clustered motifs. In a two-mouse resident--intruder assay, we identify, without behavioral labels, separate primitives for self-action, inter-animal-geometry, and social-action. The latter couples an animal's action to its partner's relative bearing, enabling the action to incorporate the social geometry in which it occurs. dLDS further decodes human-labeled social behaviors (i.e., "attack", "investigation", "mount", and "other") more accurately than behavior-selective keypoint-MoSeq syllable sets using fewer units. Together, these results demonstrate that compositional, time-varying linear dynamics can provide a path towards flexible and interpretable modeling of action-level behavior for both individual and social behavior.
- organism: mouse
- assay: imaging
- research focus: cell type annotation
- research focus: clustering
- research focus: trajectory inference
- research focus: cell-cell communication
- approach: deep learning
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Quantifying social roles in multi-animal videos using subject-aware deep-learning
Kelly Goss, Lézio Soares Bueno-Júnior, … Yujia Hu·bioRxiv·Jul 7, 2024
- Keypoint-MoSeq: parsing behavior by linking point tracking to pose dynamics
Caleb Weinreb, Jonah E Pearl, … Sandeep Robert Datta·bioRxiv·Mar 16, 2023
- Mapping the landscape of social behavior
Ugne Klibaite, Tianqing Li, … Timothy Dunn·CellPeer-reviewed·Mar 4, 2025
- The Mouse Action Recognition System (MARS) software pipeline for automated analysis of social behaviors in mice
Cristina Segalin, Jalani Williams, … Ann Kennedy·eLifePeer-reviewed·Oct 19, 2021
- Identifying behavioral links to neural dynamics of multifiber photometry recordings in a mouse social behavior network
Yibo Chen, Jonathan M. Chien, … Zhe Sage Chen·Journal of Neural EngineeringPeer-reviewed·Jun 1, 2024
- LabGym: quantification of user-defined animal behaviors using learning-based holistic assessment
Y. Hu, C. Ferrario, … B. Ye·bioRxiv·Feb 17, 2022