Brain ConnectivityNeurosciencePeer-reviewed journal article
A novel method for tri-clustering dynamic functional network connectivity (dFNC) identifies significant schizophrenia effects across multiple states in distinct subgroups of individuals
Md Abdur RahamaniD, Eswar DamarajuiD, Jessica A. TurneriD, Theo G.M. van ErpiD, Daniel H. MathaloniD, Jatin G. VaidyaiD, Bryon Muller, Godfrey D. PearlsoniD, Vince D. CalhouniD
Abstract
BackgroundBrain imaging data collected from individuals are highly complex with unique variation; however, such variation is typically ignored in approaches that focus on group averages or even supervised prediction. State-of-the-art methods for analyzing dynamic functional network connectivity (dFNC) subdivide the entire time course into several (possibly overlapping) connectivity states (i.e., sliding window clusters). Though, such an approach does not factor in the homogeneity of underlying data and may end up with a less meaningful subgrouping of the dataset. MethodsDynamic-N-way tri-clustering (dNTiC) incorporates a homogeneity benchmark to approximate clusters that provide a more apples-to-apples comparison between groups within analogous subsets of time-space and subjects. dNTiC sorts the dFNC states by maximizing similarity across individuals and minimizing variance among the pairs of components within a state. ResultsResulting tri-clusters show significant differences between schizophrenia (SZ) and healthy control (HC) in distinct brain regions. Compared to HC, SZ in most tri-clusters show hypoconnectivity (low positive) among subcortical, default mode, cognitive control but hyper-connectivity (high positive) between sensory networks. In tri-cluster 3, HC subjects show significantly stronger connectivity among sensory networks and anticorrelation between subcortical and sensory networks compared to SZ. Results also provide statistically significant difference in reoccurrence time between SZ and HC subjects for two distinct dFNC states. ConclusionsOutcomes emphasize the utility of the proposed method for characterizing and leveraging variance within high-dimensional data to enhance the interpretability and sensitivity of measurements in the study of a heterogeneous disorder like schizophrenia and in unconstrained experimental conditions such as resting fMRI.
- organism: human
- assay: imaging
- research focus: clustering
- research focus: differential expression
- approach: statistical model
- Citations
- 18
- FWCI
- 1.84
- Field percentile
- top 16%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Explainable Fuzzy Clustering Framework Reveals Divergent Default Mode Network Connectivity Dynamics in Schizophrenia
Charles A. Ellis, Robyn L. Miller, Vince D. Calhoun·Frontiers in PsychiatryPeer-reviewed·Feb 14, 2024
- A Novel Explainable Fuzzy Clustering Approach for fMRI Dynamic Functional Network Connectivity Analysis
Charles A. Ellis, Robyn L. Miller, Vince D. Calhoun·Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)Peer-reviewed·Jul 24, 2023
- Pairing Explainable Deep Learning Classification with Clustering to Uncover Effects of Schizophrenia Upon Whole Brain Functional Network Connectivity Dynamics
Charles A. Ellis, Robyn L. Miller, Vince D. Calhoun·Neuroimage ReportsPeer-reviewed·Sep 29, 2023
- Statelets: high dimensional predominant shapes in dynamic functional network connectivity
Md Abdur Rahaman, Eswar Damaraju, … Vince D. Calhoun·bioRxiv·Aug 16, 2020
- Dynamic Functional Network Connectivity In Schizophrenia With MEG And fMRI, Do Different Time Scales Tell A Different Story?
Lori Sanfratello, Jon M. Houck, Vince D. Calhoun·Brain ConnectivityPeer-reviewed·Jan 11, 2019
- Shared dynamic functional connectivity across schizophrenia, bipolar disorder and major depressive disorder
Chao Li, Ke Cheng XU, … Fei Wang·bioRxiv·Nov 12, 2019