Bioinformatics AdvancesBioinformaticsPeer-reviewed journal article
pyALRA: python implementation of low-rank zero-preserving approximation of single cell RNA-seq
Abstract
SummaryWe present pyALRA, an efficient python implementation of the ALRA R package conceived to impute drop out values using a low-rank zero-preserving approximation for single cell RNA-seq. This re-implementation achieves similar performance prediction using corresponding python methods and allows both speed and RAM consumption improvements. AvailabilitypyALRA is released as an open-source software under the MIT license. The source code is available on GitHub at https://github.com/alexandrelanau/pyALRA.
- Citations
- 0
- FWCI
- 0.00
- Field percentile
- 18th percentile
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Low-Rank Full Matrix Factorization for dropout imputation in single cell RNA-seq and benchmarking with imputation algorithms for downstream applications
Jinghan Huang, Anson C.M. Chow, … Sheung Chi Phillip Yam·bioRxiv·Oct 21, 2024
- McImpute: Matrix completion based imputation for single cell RNA-seq data
Aanchal Mongia, Debarka Sengupta, Angshul Majumdar·Frontiers in GeneticsPeer-reviewed·Jan 28, 2019
- scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition
Chong Chen, Changjing Wu, … Ruibin Xi·BioinformaticsPeer-reviewed·Feb 26, 2020
- DeepImpute: an accurate, fast and scalable deep neural network method to impute single-cell RNA-Seq data
Cédric G Arisdakessian, Olivier Poirion, … Lana Xia Garmire·Genome biologyPeer-reviewed·Oct 18, 2019
- Locality Sensitive Imputation for Single-Cell RNA-Seq Data
Marmar R. Moussa, Ion Măndoiu·Journal of Computational BiologyPeer-reviewed·Feb 20, 2019
- DrImpute: Imputing dropout events in single cell RNA sequencing data
Wuming Gong, Il‐Youp Kwak, … Daniel J. Garry·BMC BioinformaticsPeer-reviewed·Jun 8, 2018