Journal of Geochemical ExplorationBioinformaticsPeer-reviewed journal article
Compositional Canonical Correlation Analysis
Jan GraffelmaniD, Vera Pawlowsky‐GlahniD, Juan José EgozcueiD, Antonella BucciantiiD
Abstract
The study of the relationships between two compositions by means of canonical correlation analysis is addressed A coimnositional version of canonical correlation analysis is developed. and called CODA-CCO. We consider two approaches, using the centred log-ratio transformation and the calculation of all possible pairwise log-ratios within sets. The relationships between both approaches are pointed out, and their merits are discussed. The related covariance matrices are structurally singular, and this is efficiently dealt with by using generalized inverses. We develop compositional canonical biplots and detail their properties. The canonical biplots are shown to be powerful tools for discovering the most salient relationships between two compositions. Some guidelines for compositional canonical biplots construction are discussed. A geological data set with X-ray fluorescence spectrometry measurements on major oxides and trace elements is used to illustrate the proposed method. The relationships between an analysis based on centred log-ratios and on isometric log-ratios are also shown.
- Citations
- 27
- FWCI
- 1.27
- Field percentile
- top 17%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Co-occurrence network multicollinearity artefacts using centered log-ratio transformation
Dennis D. Krutkin, Scott Theodore Kelley·bioRxiv·Oct 8, 2026
- Compositional data analysis of microbiome and any-omics datasets: a revalidation of the additive logratio transformation
Michael John Greenacre, Marina Martínez-Álvaro, A. Blasco·Frontiers in MicrobiologyPeer-reviewed·Oct 11, 2021
- Understanding sequencing data as compositions: anoutlook and review
Thomas P. Quinn, Ionas Erb, … Tamsyn M. Crowley·BioinformaticsPeer-reviewed·Mar 26, 2018
- propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis
Thomas P. Quinn, Mark F. Richardson, … Tamsyn M. Crowley·Scientific ReportsPeer-reviewed·Nov 20, 2017
- Ratios in Disguise, Truths Arise: Glycomics Meets Compositional Data Analysis
Alex Bennett, Jon Lundstrøm, … Daniel Bojar·bioRxiv·Jun 9, 2024
- Extended applicability of causal inference to compositional data by reciprocal logarithmic ratio transformation
D. KUMAKURA, R. Yamaguchi, S. Nakaoka·bioRxiv·Jan 25, 2021