Author

S. Nakaoka

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 2 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:host-pathogen & immune response· 3 Research Focus:ecology & biodiversity· 2 Organism:human· 2 Assay:metagenomics· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

K. Kitagawa· 2 shared K. Watashi· 2 shared S. Iwami· 2 shared A. S. Perelson· 1 shared D. KUMAKURA· 1 shared H. Inaba· 1 shared H. Masuya· 1 shared H. Ohashi· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersMicrobiology

K. Kitagawa

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation for analyzing extracellular viral markers

K. Kitagawa, K. Kim, M. Iwamoto, S. Hayashi, H. Park, T. Nishiyama, N. Nakamura, Y. Fujita, S. Nakaoka, K. Aihara, A. S. Perelson, L. Allweiss, M. Dandri, K. Watashi, Y. Tanaka, S. Iwami

This study develops a multiscale mathematical model to predict intrahepatic cccDNA dynamics using serum viral markers, offering a non-invasive method for HBV infection analysis.

bioRxiv · Jun 6, 2023 · PreprintMicrobiology

Energy landscape analysis elucidates the multistability of ecological communities across environmental gradients

K. Suzuki, S. Nakaoka, S. Fukuda, H. Masuya

The paper analyzes ecological community multistability using an energy landscape approach, revealing stable states and transitions in murine gut microbiota across age.

bioRxiv · May 17, 2021Ecology

Extended applicability of causal inference to compositional data by reciprocal logarithmic ratio transformation

D. KUMAKURA, R. Yamaguchi, S. Nakaoka

This paper proposes a reciprocal logarithmic ratio transformation to apply convergent cross-mapping to compositional data, enabling causal inference in ecological studies.

bioRxiv · Jan 25, 2021 · PreprintEcology

Two strategies underlying the trade-off of hepatitis C virus proliferation: stay-at-home or leaving-home?

S. Iwanami, K. Kitagawa, Y. Asai, H. Ohashi, K. Nishioka, H. Inaba, S. Nakaoka, T. Wakita, O. Diekmann, S. Iwami, K. Watashi

This study analyzes the trade-off between two HCV proliferation strategies, finding that Jc1-n favors transmission while JFH-1 favors intracellular replication.

bioRxiv · Oct 28, 2019Evolutionary Biology