LNetReduce: tool for reducing linear dynamicnetworks with separated time scales
Marion BuffardiD, Aurélien DesoeuvresiD, Aurélien NaldiiD, Clément RequiléiD, Andrei Y. ZinovyeviD, Ovidiu RadulescuiD
Abstract
We introduce LNetReduce, a tool that simplifies linear dynamic networks. Dynamic networks are represented as digraphs labeled by integer timescale orders. Such models describe deterministic or stochastic monomolecular chemical reaction networks, but also random walks on weighted protein-protein interaction networks, spreading of infectious diseases and opinion in social networks, communication in computer networks. The reduced network is obtained by graph and label rewriting rules and reproduces the full network dynamics with good approximation at all time scales. The tool is implemented in Python with a graphical user interface. We discuss applications of LNetReduce to network design and to the study of the fundamental relation between time scales and topology in complex dynamic networks. Availabilitythe code and application examples are available at https://github.com/oradules/LNetReduce.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 0
- FWCI
- 0.00
- Field percentile
- 17th percentile
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Laplacian Dynamics and Kron Reduction in Species-Reaction Graphs of Chemical Reaction Networks
M. D. Gasparyan, Upinder S. Bhalla, … Shodhan Rao·Bulletin of Mathematical BiologyPeer-reviewed·May 16, 2026
- Dynamic characteristics rather than static hubs are important in biological networks
Silke D Werle, Nensi Ikonomi, … Hans Armin Kestler·bioRxiv·Sep 30, 2020
- ReNette: a web-infrastructure for reproducible network analysis
M. Filosi, S. Droghetti, … C. Furlanello·bioRxiv·Aug 27, 2014
- Metabolic network reductions
Mojtaba Tefagh, Stephen Boyd·bioRxiv·Mar 13, 2019
- ProcessNets: Towards an efficient approach for ensemble analysis of biological networks
Sugyani Mahapatra, Manikandan Narayanan·bioRxiv·Sep 28, 2026
- From temporal network data to the dynamics of social relationships
V. Gelardi, A. Barrat, N. Claidiere·bioRxiv·Mar 22, 2021