IEEE International Conference on Bioinformatics and Biomedicine (BIBM)BioinformaticsPeer-reviewed journal article
A Novel Activation Maximization-based Approach for Insight into Electrophysiology Classifiers
Charles A. EllisiD, Mohammad S.E. SendiiD, Robyn L. MilleriD, Vince D. CalhouniD
Abstract
Spectral analysis remains a hallmark approach for gaining insight into electrophysiology modalities like electroencephalography (EEG). As the field of deep learning has progressed, more studies have begun to train deep learning classifiers on raw EEG data, which presents unique problems for explainability. A growing number of studies have presented explainability approaches that provide insight into the spectral features learned by deep learning classifiers. However, existing approaches only attribute importance to different frequency bands. Most of the methods cannot provide insight into the actual spectral values or the relationship between spectral features that models have learned. Here, we present a novel adaptation of activation maximization for electrophysiology time-series that generates samples that indicate the features learned by classifiers by optimizing their spectral content. We evaluate our approach within the context of EEG sleep stage classification with a convolutional neural network, and we find that our approach is able to identify spectral patterns known to be associated with each sleep stage. We also find surprising results suggesting that our classifier may have prioritized the use of eye and motion artifact when identifying Awake samples. Our approach is the first adaptation of activation maximization to the domain of raw electrophysiology classification. Additionally, our approach has implications for explaining any classifier trained on highly dynamic, long time-series.
- Citations
- 14
- FWCI
- 1.62
- Field percentile
- top 13%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A Gradient-based Spectral Explainability Method for EEG Deep Learning Classifiers
Charles A. Ellis, Mohammad S.E. Sendi, … Vince D. Calhoun·bioRxiv·Jul 14, 2021
- A Novel Local Explainability Approach for Spectral Insight into Raw EEG-Based Deep Learning Classifiers
Charles A. Ellis, Robyn L. Miller, Vince D. Calhoun·IEEE International Conference on Bioinformatics and Bioengineering (BIBE)Peer-reviewed·Oct 25, 2021
- A Model Visualization-based Approach for Insight into Waveforms and Spectra Learned by CNNs
Charles A. Ellis, Robyn L. Miller, Vince D. Calhoun·Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)Peer-reviewed·Jul 11, 2022
- Novel Methods for Elucidating Modality Importance in Multimodal Electrophysiology Classifiers
Charles A. Ellis, Mohammad S.E. Sendi, … Vince D. Calhoun·Frontiers in NeuroinformaticsPeer-reviewed·Mar 15, 2023
- Explainable Sleep Stage Classification with Multimodal Electrophysiology Time-series
Charles A. Ellis, Rongen Zhang, … May Dongmei Wang·Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)Peer-reviewed·Nov 1, 2021
- A Framework for Systematically Evaluating the Representations Learned by A Deep Learning Classifier from Raw Multi-Channel Electroencephalogram Data
Charles A. Ellis, Abhinav Sattiraju, … Vince D. Calhoun·bioRxiv·Mar 20, 2023