bioRxivBioengineering
DMENet: Diabetic Macular Edema Diagnosis using Hierarchical Ensemble of CNNs
Abstract
Diabetic Macular Edema (DME) is an advanced stage of Diabetic Retinopathy (DR) and can lead to permanent vision loss. Currently, it affects 26.7 million people globally and on account of such huge number of DME cases and limited number of ophthalmologists, it is desirable to automate the diagnosis process. Computer-assisted, deep learning based diagnosis will help in early detection, following which appropriate medication can help to mitigate the vision loss. Method: In order to automate the screening of DME, we propose a novel DMENet Algorithm which is built on the pillars of Convolutional Neural Networks (CNNs). DMENet analyses the preprocessed color fundus images and passes it through a two-stage pipeline. The first stage detects the presence or absence of DME whereas the second stage takes the positive cases and grades the images based on severity. In both the stages, we use a novel Hierarchical Ensemble of CNNs (HE-CNN). This paper uses two of the popular publicly available datasets IDRiD and MESSIDOR for classification. Preprocessing on the images is performed using morphological opening, Gaussian kernel and the dataset is augmented to solve the class imbalance problem. Results: The proposed methodology achieved an Accuracy of 96.12%, Sensitivity of 96.32%, Specificity of 95.84%, and F-1 score of 0.9609. Conclusion: These excellent results establishes the validity of the proposed methodology for use in DME screening and solidifies the applicability of HE-CNN classification technique in the domain of bio-medical imaging.
- assay: imaging
- assay: fluorescence / live-cell microscopy
- research focus: differential expression
- research focus: cell type annotation
- research focus: clustering
- approach: deep learning
- approach: machine learning (classical)
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Diabetic Retinopathy detection through integration of Deep Learning classification framework
Alexander Rakhlin·bioRxiv·Jun 19, 2018
- Convolutional neural networks for mild diabetic retinopathy detection: An experimental study
Rubina Sarki, Sandra Michalska, … Yanchun Zhang·bioRxiv·Sep 9, 2019
- Accurate detection of non-proliferative diabetic retinopathy in optical coherence tomography images using convolutional neural networks
M. Ghazal, S. Ali, … A. S. El-Baz·bioRxiv·Jun 11, 2019
- Deep-learning based retinal fluid segmentation in optical coherence tomography images using a cascade of ENets
Sophie Loizillon, Cédric Meurée, … Arnaud Lambert·bioRxiv·Sep 24, 2021
- Deep learning is effective for the classification of OCT images of normal versus Age-related Macular Degeneration
Cecilia S. Lee, Doug M. Baughman, Aaron Lee·bioRxiv·Dec 14, 2016
- Deep-Learning Based, Automated Segmentation Of Macular Edema In Optical Coherence Tomography
Cecilia S. Lee, Ariel J. Tyring, … Aaron Lee·Biomedical Optics ExpressPeer-reviewed·Jun 23, 2017