bioRxivEcology
Incorporating trait-based mechanisms, alternative interaction modes and forbidden links increases the minimum trait dimensionality of ecological networks
D. A. Kiziridis, L. Boddy, D. C. Eastwood, C. Yuan, M. S. Fowler
Abstract
O_LISpecies traits mediate ecological interaction outcomes and community structure. It is important, therefore, to identify the minimum number of traits required to characterise observed networks, i.e. the minimum dimensionality. Existing methods for estimating minimum dimensionality often lack three features commonly associated with a higher numbers of traits: a mechanistic description of observed interactions, alternative interaction modes (e.g. different feeding strategies such as active vs sit-and-wait feeding), and trait-mediated forbidden links. Omitting these features can lead to underestimation of the trait numbers involved, and therefore, minimum dimensionality. Here, we develop a minimum mechanistic dimensionality measure, accounting for these three features. C_LIO_LIThe only input required by our method is the observed network of interaction outcomes. We then assume how traits are mechanistically involved in alternative interaction modes. These unidentified traits are contrasted using pairwise performance inequalities between the interacting species. E.g. if a predator feeds upon a prey species via a typical predation mode, in each step of the predation sequence the predators performance must be greater than the preys. We construct a system of inequalities from all observed outcomes, which we attempt to solve with mixed integer linear programming. The minimum number of traits required for a feasible system of inequalities provides our dimensionality estimate. C_LIO_LIWe applied our method to 658 published empirical ecological networks including animal dominance, predator-prey, primary consumption, pollination, parasitism and seed dispersal networks, to compare with minimum dimensionality estimates when the three focal features are missing. Minimum dimensionality was typically higher when including alternative interaction modes (54% of empirical networks), forbidden interactions as trait-mediated interaction outcomes (92%), or a mechanistic perspective (81%), compared to network dimensionality estimates missing these features. C_LIO_LIOur method can reduce the risk of omitting essential traits that are involved mechanistically, in different interaction modes, or in failure outcomes. More accurate estimates will allow us to parameterise models to generate theoretical networks with a more realistic structure at the interaction outcome level. Thus, we hope our method can improve predictions of community structure and structure-dependent dynamics. C_LI
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A common framework for identifying linkage rules across different types of interactions
Ignasi Bartomeus, Dominique Gravel, … Maud Bernard-Verdier·bioRxiv·Aug 10, 2015
- Analyzing ecological networks of species interactions
- A general trait-based model for multiplex ecological networks
K. R. S. Hale, E. Thebault, F. S. Valdovinos·bioRxiv·Aug 8, 2023
- Measuring Nestedness: A comparative study of the performance of different metrics
C. Payrato-Borras, L. Hernandez, Y. Moreno·bioRxiv·Jan 31, 2020
- A global comparison of structural properties across ecological network types: the role of connectance, degree distribution and sampling inconsistencies
David García‐Callejas, Élisa Thébault, … Sonia Kéfi·Journal of Animal EcologyPeer-reviewed·Jul 1, 2026
- Correlated traits generate the structure and stability of multiplex ecological networks
Kayla R. S. Hale, Élisa Thébault, Fernanda S. Valdovinos·bioRxiv·Oct 2, 2026