bioRxivBioinformaticsPreprint
Probing the transcriptome response to shivering in skeletal muscle using a multilayered bioinformatics approach
Rosalie BaakiD, Guido J. E. J. HooiveldiD, Patrick SchrauweniD, Joris Hoeks JiD, Reinier Raymakers, Anja van de StolpeiD, Sander KersteniD, Eric KalkhoveniD
Abstract
Cold acclimation holds therapeutic potential for improving metabolic health. We previously demonstrated that repeated cold-induced shivering enhances insulin sensitivity in humans. However, the molecular pathways that underlie the skeletal muscle shivering response, and how these relate to beneficial physiological effects, remain poorly understood. In this study, we combined complementary bioinformatics approaches to allow in-depth analysis of the transcriptomic response of human skeletal muscle to repeated shivering. We identified a robust transcriptional signature and show a sex-specific component in the shivering skeletal muscle response, which seemed to diminish following cold adaptation. Our findings provide mechanistic insights into cold-induced muscle adaptations, shed light on potential interesting molecular targets for further investigation, and emphasize the importance of including both sexes in future cold acclimation studies.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Shivering, but not adipose tissue thermogenesis, increases as a function of mean skin temperature in cold-exposed men and women
L Dumont, Gabriel Mary Richard, … Denis P. Blondin·Cell MetabolismPeer-reviewed·Jul 16, 2025
- Comparative multi-tissue profiling reveals extensive tissue-specificity in transcriptome reprogramming upon cold exposure
M. Trajkovski, N. Hadadi, … M. Spiljar·bioRxiv·Mar 26, 2021
- Brown Adipose Tissue and Skeletal Muscle Coordinately Contribute to Thermogenesis in Mice
Yuna Izumi-Mishima, Rie Tsutsumi, … Hiroshi Sakaue·eLifePeer-reviewed·Oct 27, 2025
- Loss of α-actinin-3 during human evolution provides superior cold resilience and muscle heat generation
Victoria L. Wyckelsma, Tomas Venckūnas, … Håkan Westerblad·The American Journal of Human GeneticsPeer-reviewed·Feb 17, 2021
- Transcriptomic analysis of 40 human and rodent skeletal muscle exerkines
Hash Brown Taha, Nathan Robbins, … Aleksander Bogoniewski·bioRxiv·Dec 22, 2025
- Muscle nonshivering thermogenesis in a feral mammal