bioRxivGenomicsPreprint
Genome assembly of the milky mangrove Excoecaria agallocha
Project Coordinator and Co-Principal Investigators, Jerome H. L. HuiiD, Ting‐Fung ChaniD, Leo L. Chan, Siu Gin CheungiD, Chi Chiu CheangiD, James Kar‐Hei FangiD, Juan Diego Gaitán‐EspitíaiD, Stanley C. K. LauiD, Yik‐Hei SungiD, Chris K.C. WongiD, Kevin Y.L. Yip, Yingying WeiiD, Sean T.S. LawiD, Wai Lok SoiD, Genome assembly and gene model prediction, Wenyan NongiD, Genome analysis and quality control, Sample collector and logistics, David T. W. LauiD, Shing Yip LeeiD, Ho Yin YipiD
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Abstract
The milky mangrove Excoecaria agallocha is a latex-secreting mangrove that are distributed in tropical and subtropical regions. While its poisonous latex is regarded as a potential source of phytochemicals for biomedical applications, the genomic resources of E. agallocha remains limited. Here, we present a chromosomal level genome of E. agallocha, assembled from the combination of PacBio long-read sequencing and Omni-C data. The resulting assembly size is 1,332.45 Mb and has high contiguity and completeness with a scaffold N50 of 58.9 Mb and a BUSCO score of 98.4 %. 73,740 protein-coding genes were also predicted. The milky mangrove genome provides a useful resource for further understanding the biosynthesis of phytochemical compounds in E. agallocha.
- organism: plant (other)
- assay: whole-genome sequencing
- research focus: genome assembly
- approach: experimental assay
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