SoftwareXEcologyPeer-reviewed journal article
DATRASextra: An R package for streamlined workflows with ICES DATRAS bottom-trawl survey data
Tobias Karl MildenbergeriD, Federico MaioliiD, Casper Willestofte BergiD
Abstract
Scientific bottom-trawl surveys provide essential fisheries-independent data for fisheries and ecosystem research. In the Northeast Atlantic, the ICES Database of Trawl Surveys (DATRAS) compiles haul-level information, species- and length-specific catch data, and individual biological observations across multiple long-term surveys. However, reproducible workflows for processing and integrating these relational datasets remain challenging. We present DATRASextra, an open-source R package that provides modular end-to-end workflows for accessing, cleaning, harmonising, quality-controlling, and analysing DATRAS survey data. The package supports derivation of standardised haul-level survey variables, integration of multiple surveys, and generation of analysis-ready datasets for downstream applications including stock assessment, biodiversity analyses, and large-scale synthesis efforts such as Fish-Glob.
- research focus: database / resource
- research focus: software / tool
- research focus: benchmarking
- approach: experimental assay
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- 'surveyjoin': A Standardized Database of Fisheries Bottom Trawl Surveys in the Northeast Pacific Ocean
Eric J. Ward, Philina A. English, … Emily H. Markowitz·bioRxiv·Mar 14, 2025
- Are we ready to track climate-driven shifts in marine species across international boundaries? - A global survey of scientific bottom trawl data
A. A. Maureaud, R. Frelat, … Levitt-B·bioRxiv·Jun 18, 2020
- nzffdr: an R package to import, clean and update data from the New Zealand Freshwater Fish Database
- Open science resources for the discovery and analysis of Tara Oceans Data
Stéphane Pesant, Fabrice Not, … Tara Oceans Consortium Coordinators·Scientific DataPeer-reviewed·May 26, 2015
- PeskAAS: A near-real-time, open-source monitoring and analytics system for small-scale fisheries
A. Tilley, J. Dos Reis Lopes, S. P. Wilkinson·bioRxiv·Jun 3, 2020
- Mitigating ecosystem impacts of bottom trawl fisheries for North Sea sole Solea solea by replacing mechanical by electrical stimulation
A. Rijnsdorp, J. Depestele, … T. v. Kooten·bioRxiv·Jan 21, 2020