bioRxivPharmacology & Toxicology
Investigation of a derived adverse outcome pathway (AOP) network for endocrine-mediated perturbations
Abstract
An adverse outcome pathway (AOP) is a compact representation of the available mechanistic information on observed adverse effects upon environmental exposure. Sharing of events across individual AOPs has led to the emergence of AOP networks. Since AOP networks are expected to be functional units of toxicity prediction, there is current interest in their development tailored to specific research question or regulatory problem. To this end, we have developed a detailed workflow to construct a comprehensive endocrine-specific AOP (ED-AOP) network. Connectivity analysis of the ED-AOP network comprising 48 AOPs reveals 7 connected components and 12 isolated AOPs. Subsequently, we apply standard network measures to perform an in-depth analysis of the two largest connected components of the ED-AOP network. Notably, the graph-theoretic analyses led to the identification of important events including points of convergence or divergence in the ED-AOP network. Detailed analysis of the largest component in the ED-AOP network gives insights on the systems-level perturbations caused by endocrine disruption, emergent paths, and stressor-event associations. In sum, the derived ED-AOP network can be used to address the current knowledge gaps in the existing regulatory framework and aid in better risk assessment of environmental chemicals.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A Data-Driven Approach for the Development of a Time-informed Adverse Outcome Pathway-network for Cardiotoxicity of Environmental Chemicals
Alexandra Schaffert, Sivakumar Murugadoss, … Martin Paparella·Environmental Science & TechnologyPeer-reviewed·Oct 2, 2026
- An integrative data-centric approach to derivation and characterization of an adverse outcome pathway network for cadmium-induced toxicity
A. K. Sahoo, N. Chivukula, … A. Samal·bioRxiv·Dec 12, 2023
- Leveraging integrative toxicogenomic approach towards development of stressor-centric adverse outcome pathway networks for plastic additives
A. K. Sahoo, N. Chivukula, … A. Samal·bioRxiv·Mar 27, 2024
- AOP-helpFinder 3.0: from text mining to network visualization of key event relationships, and knowledge integration from multi-sources.
Thomas Jaylet, Florence Jornod, … Karine Audouze·BioinformaticsPeer-reviewed·Jun 28, 2025
- AOP Net: An AI-Enhanced Software Platform for the Visualization and Analysis of Complex Toxicological Pathways
Abhik Seal·bioRxiv·Aug 25, 2025
- AOPGraphExplorer 2.0: An Interactive Graph-Based Platform for Multi-Domain Mechanistic Annotation and Exploration of Adverse Outcome Pathways
Asmaa A. Abdelwahab, Barry J. Hardy·bioRxiv·Mar 2, 2026