bioRxivEcology
Accumulation-depuration data collection in support of toxicokinetic modelling
Abstract
Regulatory bodies requires evaluation of bioaccumulation of chemicals within organisms with the objective to better assess risks linked to the toxicity of active substances. To this end, toxicokinetic (TK) data are particularly useful to relate the chemical exposure concentration to the accumulation and depuration processes happening within organisms. The bioaccumulative property of substances is quantified by bioaccumulation metrics obtained by fitting TK models to data collected from bioaccumulation tests. The internal concentrations of the studied substances are measured within organisms at regular time points during both accumulation and depuration phases, and their time course is captured by TK models thus providing bioaccumulation metrics. Still today, raw TK data remain difficult to access, as most of the time provided within papers in plots only. To increase accessibility to TK data, we present in this paper a wide collection of raw data sets extracted from the scientific literature in support of TK modelling to be performed with the MOSAICbioacc web application (https://mosaic.univ-lyon1.fr/bioacc/).
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- New perspectives on the calculation of bioaccumulation metrics for active substances in living organisms
A. Ratier, C. Lopes, … S. Charles·bioRxiv·Jul 7, 2020
- Improvements in estimating bioaccumulation metrics in the light of toxicokinetics models and Bayesian inference
A. Ratier, C. Lopes, S. Charles·bioRxiv·Jan 17, 2022
- Generic solving of one-compartment toxicokinetic models
S. CHARLES, A. Ratier, C. Lopes·bioRxiv·May 6, 2021
- 'rbioacc': an R-package to analyse toxicokinetic data
A. Ratier, V. Baudrot, … S. CHARLES·bioRxiv·Sep 8, 2021
- Enabling Transparent Toxicokinetic Modeling for Public Health Risk Assessment
Sarah E. Davidson-Fritz, Caroline Ring, … John F. Wambaugh·PLoS ONEPeer-reviewed·Apr 16, 2025
- Taking full advantage of modelling to better assess environmental risk due to xenobiotics
S. Charles, A. Ratier, … C. Lopes·bioRxiv·Mar 24, 2021