matrix factorization

Ultra-fast Identity by Descent Detection in Biobank-Scale Cohorts using Positional Burrows-Wheeler Transform

RaPID detects identity by descent in large biobank-scale cohorts using a randomized positional BWT approach, achieving linear scaling and high accuracy.

Detection and characterization of low and high genome coverage regions using an efficient running median and a double threshold approach.

The paper introduces a method to detect and characterize low and high coverage regions in genomes using a running median and double threshold approach.

Geographical restructuring of Arabidopsis thaliana’s genetic makeup in the Iberian Peninsula due to climate change based on genetic cluster membership

The paper predicts how climate change will alter genetic cluster memberships of Arabidopsis thaliana across the Iberian Peninsula using statistical models.

Robust ergodicity and tracking in antithetic integral control of stochastic biochemical reaction networks

The paper verifies ergodicity and controllability conditions for antithetic integral control in stochastic biochemical reaction networks using quantitative and qualitative methods.

Deriving shape-based features for C. elegans locomotion using dimensionality reduction methods

The paper uses dimensionality reduction methods to analyze C. elegans locomotion shapes and compares results across techniques to identify features distinguishing wild-type and mutant worms.