Author

A. A. Ashkarran

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 3 Biophysics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:deep learning· 2 Organism:human· 2 Assay:proteomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

H. Gharibi· 3 shared M. Mahmoudi· 3 shared A. A. Saei· 2 shared S. M. Modaresi· 2 shared A. Guha· 1 shared A. S. Dibavar· 1 shared A. Tamadon· 1 shared B. Dutagaci· 1 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersBioengineering

H. Gharibi

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Standardizing protein corona characterization in nanomedicine: a multi-center study to enhance reproducibility and data homogeneity

A. A. Ashkarran, H. Gharibi, S. M. Modaresi, A. A. Saei, M. Mahmoudi

This study standardizes protein corona characterization across proteomics centers, improving data consistency and reproducibility through unified protocols and workflows.

bioRxiv · Apr 25, 2024 · PreprintBioengineering

Deep Plasma Proteome Profiling by Modulating Single Nanoparticle Protein Corona with Small Molecules

A. A. Ashkarran, H. Gharibi, S. A. Sadeghi, S. M. Modaresi, Q. Wang, T.-J. Lin, G. Yerima, A. Tamadon, M. Sayadi, M. Jafari, Z. Lin, D. Ritz, D. Kakhniashvili, A. Guha, M. Mofrad, , M. Mahmoudi

This paper demonstrates that adding small molecules to plasma enhances nanoparticle protein corona diversity, significantly increasing the number of detectable proteins in plasma proteome profiling.

bioRxiv · Mar 6, 2024 · PreprintBioengineering

Multi-Omics Analysis of Magnetically Levitated Plasma Biomolecules

A. A. Ashkarran, H. Gharibi, D. A. Zeki, I. Radu, F. Khalighinejad, K. Keyhanian, C. K. Abrahamsson, C. Ionete, A. A. Saei, M. Mahmoudi

The paper uses magnetic levitation to separate plasma biomolecules into ellipsoidal bands and performs multi-omics analysis to identify health-related differences in lipid and metabolite profiles across multiple sclerosis subtypes.

bioRxiv · Sep 6, 2022Bioengineering

Charge-Driven Phase Condensation of RNA and Proteins Suggests Broad Role of Phase Separation in Cytoplasmic Environments

B. Dutagaci, G. Nawrocki, J. Goodluck, A. A. Ashkarran, C. G. Hoogstraten, L. J. Lapidus, M. Feig

This study shows that RNA and positively charged proteins can form phase-separated condensates through electrostatic complementarity, suggesting a broad role of phase separation in cytoplasmic environments.

bioRxiv · Apr 23, 2020Biophysics