Author

A. D. Reyes-Figueroa

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 3 Biochemistry· 1

Signature Assays, Organisms & Methods

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Approach:mechanistic / dynamical model· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:machine learning (classical)· 1 Assay:multiome· 1 Research Focus:protein folding & dynamics· 1 Assay:proteomics· 1

Frequent Co-Authors

M. Karttunen· 2 shared A. A. Gurtovenko· 1 shared C. Contreras-Aburto· 1 shared C. Q. Scheckhuber· 1 shared D. Frankel· 1 shared D. Martinez-Peon· 1 shared F. Favela-Rosales· 1 shared I. Ibarra· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 10 mutual co-author links

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2 shared papersBiophysics

M. Karttunen

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4 papers

Recent·Most cited

BiochemistrybioRxivJun 5, 2022

On the prediction of arginine glycation using artificial neural networks

U. Que-Salinas, D. Martinez-Peon, A. D. Reyes-Figueroa…·C. Q. Scheckhuber

This paper predicts arginine glycation using an artificial neural network, achieving 75% accuracy in estimating glycation probabilities without binary classification.

DOI 10.3390/s22145237

proteomicsdeep learning

𝕏 PostBluesky

BiophysicsbioRxivPreprintNov 25, 2021

The structure of the enigmatic ripple phase in saturated bilayers resolved: Machine learning reveals four lipid populations

M. Davis, A. D. Reyes-Figueroa, A. A. Gurtovenko…·M. Karttunen

The paper uses machine learning to analyze MD simulations of DPPC bilayers and identifies four distinct lipid populations in the ripple phase.

DOI 10.1101/2021.11.25.470048

multiomemachine learning (classical)

𝕏 PostBluesky

BiophysicsbioRxivPreprintJul 31, 2021

Molecular dynamics simulation of a model brain membrane with and without a 14-3-3 tau protein

C. Contreras-Aburto, F. Favela-Rosales, J. A. Arvayo-Zatarain…·P. Castro-Villarreal

This study uses molecular dynamics simulations to show that the 14-3-3 tau protein alters the structural and dynamical properties of a model brain membrane.

DOI 10.1101/2021.07.31.454604

mechanistic / dynamical model

𝕏 PostBluesky

BiophysicsbioRxivPreprintMay 4, 2020

Cholesterol Sequestration by Xenon Leads to Lipid Raft Destabilization

A. D. Reyes-Figueroa, M. Karttunen, J. C. Ruiz-Suarez

The paper uses simulations to show xenon sequesters cholesterol from lipid rafts, destabilizing them and potentially explaining xenon's anesthetic effect.

DOI 10.1101/2020.05.04.077727

mechanistic / dynamical model

𝕏 PostBluesky