Author

A. M. Yu

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biochemistry· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. A. Chen· 2 shared J. B. Lucks· 2 shared E. J. Strobel· 1 shared E. N. White· 1 shared K. E. Watters· 1 shared L. Cheng· 1 shared N. L. Brandt· 1 shared P. M. Gasper· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 19 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBiochemistry

A. A. Chen

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch

L. Cheng, E. N. White, N. L. Brandt, A. M. Yu, A. A. Chen, J. B. Lucks

The paper investigates how ligand binding induces conformational changes in a purine-sensing riboswitch by stabilizing intermediate structures through strand exchange processes.

bioRxiv · Oct 25, 2021Biochemistry

Computationally Reconstructing Cotranscriptional RNA Folding Pathways from Experimental Data Reveals Rearrangement of Non-Native Folding Intermediates

A. M. Yu, P. M. Gasper, E. J. Strobel, K. E. Watters, A. A. Chen, J. B. Lucks

This paper introduces R2D2, a method to predict RNA folding pathways from cotranscriptional SHAPE-Seq data, revealing non-native intermediates in E. coli SRP RNA folding.

bioRxiv · Jul 28, 2018Biochemistry