Author

A. R. Panchenko

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Biophysics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 2 Assay:whole-exome sequencing· 2 Approach:biophysical modeling· 1 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:differential expression· 1 Assay:proteomics· 1

Frequent Co-Authors

A. Goncearenco· 2 shared A. Onufriev· 1 shared A. R. Banday· 1 shared A. Rajan· 1 shared A. Thomas· 1 shared A. Venugopalan· 1 shared A.-L. Brown· 1 shared C. A. Carter· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersCancer Biology

A. Goncearenco

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Author profile →

3 papers

Recent·Most cited

Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails

Y. Peng, S. Li, A. Onufriev, D. Landsman, A. R. Panchenko

The paper uses molecular dynamics simulations to study how histone tails modulate nucleosome DNA accessibility and protein binding, revealing distinct binding modes and competitive interactions.

bioRxiv · Oct 30, 2020Biophysics

Finding Driver Mutations in Cancer: Elucidating the Role of Background Mutational Processes

A.-L. Brown, M. Li, A. Goncearenco, A. R. Panchenko

This study identifies driver mutations in cancer by adjusting mutation recurrence frequency for background mutability, showing improved driver prediction compared to existing methods.

bioRxiv · Apr 1, 2019Cancer Biology

Integrated proteogenomic analysis of metastatic thoracic tumors identifies APOBEC mutagenesis and copy number alterations as drivers of proteogenomic tumor evolution and heterogeneity

N. Roper, S. Gao, T. K. Maity, A. R. Banday, X. Zhang, A. Venugopalan, C. M. Cultraro, R. Patidar, S. Sindiri, A. Goncearenco, A. R. Panchenko, R. Biswas, A. Thomas, A. Rajan, C. A. Carter, , U. Guha

bioRxiv · May 11, 2018Cancer Biology