Author

Aaron Agarunov

Memorial Sloan Kettering Cancer Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:protein design· 1 Research Focus:protein structure prediction· 1 Assay:proteomics· 1

Frequent Co-Authors

Ahmet ZehiriD· 1 shared Aijazuddin SyediD· 1 shared Alan LiiD· 1 shared Aliaksandra Samoila· 1 shared Angela Rose BrannoniD· 1 shared Anita S. BowmaniD· 1 shared Anoop Balakrishnan RemaiD· 1 shared Benjamin A. KrantziD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperGenomics

Ahmet ZehirORCID

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2 papers

Recent·Most cited

CELL-E 2: Translating Proteins to Pictures and Back with a Bidirectional Text-to-Image Transformer

Emaad Khwaja, Yun Song, Aaron Agarunov, Bo Huang

CELL-E 2 translates protein sequences to images of subcellular localization and vice versa, enabling de novo protein design and generating novel nuclear localization signals.

neural information processing systems · Jan 1, 2023Peer-reviewedBioinformatics

Enhanced specificity of high sensitivity somatic variant profiling in cell-free DNA via paired normal sequencing: design, validation, and clinical experience of the MSK-ACCESS liquid biopsy assay

Angela Rose Brannon, Gowtham Jayakumaran, Monica S. Diosdado, Juber Patel, Разумова Анна Ивановна, Yu Hu, Fanli Meng, Mohammad Haque, Justyna Sadowska, Brian J. Murphy, Tessara Baldi, Ian Johnson, Ryan N. Ptashkin, Maysun Hasan, Preethi Srinivasan, , Ryma Benayed

The paper describes the development and clinical application of MSK-ACCESS, a liquid biopsy assay that improves the specificity of somatic variant detection in cell-free DNA by using paired normal sequencing.

bioRxiv · Jun 27, 2020 · PreprintGenomics