Author

Ahmed Faik

Ohio University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Research Focus:protein folding & dynamics· 1

Frequent Co-Authors

Michael HeldiD· 2 shared Abhijit SukuliD· 1 shared John W. Mishler‐Elmore· 1 shared Mohsin Ali NasiriD· 1 shared Samia Nawaz· 1 shared Sumit SharmaiD· 1 shared Yadi ZhouiD· 1 shared Zawar HussainiD· 1 shared

Activity by Year

2022-2026 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 10 mutual co-author links

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2 shared papersPlant Biology

Michael HeldORCID

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3 papers

Recent·Most cited

PlantNetX: A web-based transcriptomic resource integrating bulk and single-cell RNA-seq for plant functional genomics.

Mohsin Ali Nasir, Samia Nawaz, Ahmed Faik

PlantNetX integrates bulk and single-cell RNA-seq data to enable co-expression network analysis and cell-type-specific gene expression studies in plants.

bioRxiv · Aug 5, 2026 · PreprintBioinformatics

In silico analysis reveals the structural basis of TomEP specificity, a tomato extensin peroxidase

Zawar Hussain, Sumit Sharma, Ahmed Faik, Michael Held

This paper uses in silico analysis to determine the structural basis of TomEP specificity for crosslinking extensin monomers, revealing key residues and motifs involved in substrate binding.

bioRxiv · Mar 13, 2026 · PreprintPlant Biology

PlantNexus: A Gene Co-expression Network Database and Visualization Tool for Barley and Sorghum

Yadi Zhou, Abhijit Sukul, John W. Mishler‐Elmore, Ahmed Faik, Michael Held

The paper constructs gene co-expression networks for barley and sorghum using RNA-seq data and provides a database and visualization tool called PlantNexus.

Plant and Cell Physiology · Jan 10, 2022Peer-reviewedBioinformatics