Author

Alessandro Ferrari

Georgia Institute of TechnologyPrimary ORCID profile (0000-0003-2397-7079 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Alessandro FerrariiD1 paper · Policlinico San Matteo Fondazione

Biology Disciplines

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:scATAC-seq· 1

Frequent Co-Authors

Anne Dodd· 1 shared Greg C. GibsoniD· 1 shared Margaret A. BrowniD· 1 shared Russell D. WolfingeriD· 1 shared Shi FangiD· 1 shared Subra KugathasaniD· 1 shared Vasantha L. KolachalaiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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7 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Anne Dodd

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1 paper

Recent·Most cited

snATAC-Express infers Gene Expression from Prioritized Chromatin Accessibility Peaks using Machine Learning

Margaret A. Brown, Alessandro Ferrari, Anne Dodd, Shi Fang, Vasantha L. Kolachala, Subra Kugathasan, Russell D. Wolfinger, Greg C. Gibson

The paper develops a machine learning pipeline to infer gene expression from chromatin accessibility peaks using single nuclear multi-omic data, finding that important peaks are enriched in GWAS variants for inflammatory bowel disease and lupus.

bioRxiv · Jul 25, 2025 · PreprintBioinformatics