Author

Alexis Ayuketah

National Institutes of Health

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Research Focus:differential expression· 3 Organism:human· 3 Approach:experimental assay· 2 Assay:long-read sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Abraham Moller· 3 shared Breeana BakeriD· 3 shared Cedric KouamiD· 3 shared Cornelis BlauwendraatiD· 3 shared Cory A. WelleriD· 3 shared Kimberley J. BillingsleyiD· 3 shared Kimberly PaquetteiD· 3 shared Laksh MalikiD· 3 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Abraham Moller

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

SALRR: Scalable Analysis of Long-Read RNA-Seq Enables Comprehensive Transcriptome Profiling in Human Brain

Cedric Kouam, Jackson Mingle, Pilar Álvarez Jerez, Allison Evans, Abraham Moller, Breeana Baker, Cory A. Weller, Kimberly Paquette, Janet Brooks, Spencer M. Grant, Alexis Ayuketah, Melissa Meredith, Joanna Palade, Laksh Malik, Kristen Hise, , Kimberley J. Billingsley

SALRR provides a scalable platform for long-read RNA-seq analysis, identifying novel splice variants in human brain tissue.

bioRxiv · Aug 29, 2026 · PreprintGenomics

Long-read sequencing maps transposable element variation and its regulatory and epigenetic effects in the human brain

Alexis Ayuketah, Melissa Meredith, Cristian Groza, Abraham Moller, Kensuke Daida, Adam Catching, Cory A. Weller, Cedric Kouam, Luis Paulin, Laksh Malik, Breeana Baker, Fangle Hu, Sarah Bromberek, Pilar Álvarez Jerez, Kimberly Paquette, , Kimberley J. Billingsley

This study uses long-read sequencing to map transposable element variation in human brain tissue, revealing regulatory and epigenetic effects across cell types and ancestries.

bioRxiv · Jul 3, 2026 · PreprintGenomics

Haplotype-Resolved DNA Methylation at the APOE Locus identifies Allele-Specific Epigenetic Signatures Relevant to Alzheimer's Disease Risk

Rylee M. Genner, Melissa Meredith, Kensuke Daida, Abraham Moller, Cory A. Weller, Alexis Ayuketah, Pilar Álvarez Jerez, Stuart Akeson, Laksh Malik, Breeana Baker, Cedric Kouam, Kimberly Paquette, Adam Catching, Sarah Bromberek, Fangle Hu, , Kimberley J. Billingsley

This paper uses long-read sequencing to analyze haplotype-resolved DNA methylation at the APOE locus in brain samples, identifying allele-specific methylation patterns linked to Alzheimer's disease risk.

npj Dementia · Jun 19, 2026Peer-reviewedGenomics