Author

Alison Dooney

Technological University Dublin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 1 Approach:deep learning· 1 Organism:human· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Aidan D. MeadeiD· 1 shared Alice C. O’FarrelliD· 1 shared Annette T. ByrneiD· 1 shared Jochen H.M. PrehniD· 1 shared Liam Shiels· 1 shared Mohd Rifqi RafsanjaniiD· 1 shared Monika A. JarzabekiD· 1 shared Rahul Suresh· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Aidan D. MeadeORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

DREAMER-S: Deep leaRning-Enabled Attention-based Multiple-instance approaches with Explainable Representations for Spatial Biology

Mohd Rifqi Rafsanjani, Alison Dooney, Rahul Suresh, Alice C. O’Farrell, Monika A. Jarzabek, Liam Shiels, Annette T. Byrne, Jochen H.M. Prehn, Aidan D. Meade

DREAMER-S uses attention-based multiple-instance learning to identify spatial features in 3D imaging data for classification, achieving high F1 scores in chemotherapy response prediction.

PLoS Computational Biology · May 26, 2026Peer-reviewedBioinformatics