Author

Mohd Rifqi Rafsanjani

University of PecsORCID 0000-0002-4216-8165Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:software / tool· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Aidan D. MeadeiD· 1 shared Alice C. O’FarrelliD· 1 shared Alison Dooney· 1 shared Annette T. ByrneiD· 1 shared Jochen H.M. PrehniD· 1 shared Liam Shiels· 1 shared Monika A. JarzabekiD· 1 shared Rahul Suresh· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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1 shared paperBioinformatics

Aidan D. MeadeORCID

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3 papers

Recent·Most cited

BioinformaticsPLoS Computational BiologyPeer-reviewedMay 26, 2026

DREAMER-S: Deep leaRning-Enabled Attention-based Multiple-instance approaches with Explainable Representations for Spatial Biology

Mohd Rifqi Rafsanjani, Alison Dooney, Rahul Suresh…·Aidan D. Meade

DREAMER-S uses attention-based multiple-instance learning to identify spatial features in 3D imaging data for classification, achieving high F1 scores in chemotherapy response prediction.

DOI 10.1371/journal.pcbi.1013581

humanspatial transcriptomics

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BioinformaticsbioRxivPreprintMar 8, 2022

ScrapPaper: A web scrapping method to extract journal information from PubMed and Google Scholar search result using Python.

Mohd Rifqi Rafsanjani

ScrapPaper extracts journal information from PubMed and Google Scholar search results using web scraping in Python, providing a simple tool for literature collection.

4 citations

experimental assaysoftware / tool

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BioinformaticsbioRxivPreprintOct 19, 2021

Analysing and identifying miRNAs from RNA-seq data using miRDeep2 tool in Galaxy, a practical guide.

Mohd Rifqi Rafsanjani

This paper provides a practical guide on using miRDeep2 in Galaxy to analyze miRNAs from RNA-seq data and process its output for downstream analysis.

6 citations

bulk RNA-seqstatistical model

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