Author

Allan Phillips

J. Craig Venter Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:long-read sequencing· 1 Assay:metagenomics· 1 Organism:plant (other)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Christopher L. DupontiD· 2 shared Josh L. EspinozaiD· 2 shared Gene S. TaniD· 1 shared Karen G. LloydiD· 1 shared Melanie B. PrenticeiD· 1 shared Pauline L. KamathiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Christopher L. DupontORCID

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2 papers

Recent·Most cited

Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscriptomics

Josh L. Espinoza, Allan Phillips, Christopher L. Dupont

Leviathan provides fast, memory-efficient, and scalable taxonomic and functional profiling for metagenomics and metatranscriptomics using (pan)genome-resolved references.

bioRxiv · Jul 14, 2025 · PreprintBioinformatics

Unveiling the Microbial Realm with VEBA 2.0: A modular bioinformatics suite for end-to-end genome-resolved prokaryotic, (micro)eukaryotic, and viral multi-omics from either short- or long-read sequencing

Josh L. Espinoza, Allan Phillips, Melanie B. Prentice, Gene S. Tan, Pauline L. Kamath, Karen G. Lloyd, Christopher L. Dupont

VEBA 2.0 is a modular bioinformatics suite that enables genome-resolved analysis of prokaryotes, microeukaryotes, and viruses from short- or long-read sequencing data, with applications in diverse environments.

Nucleic Acids Research · Jun 11, 2024Peer-reviewedBioinformatics