A comparative study of techniques for differential expression analysis on RNA-Seq data
Zong Hong Zhang, Dhanisha J. Jhaveri, Vikki M. Marshall, Denis C. Bauer, Janette Edson, Ramesh K. Narayanan, Gregory J. Robinson, Andreas E. Lundberg, Perry F. Bartlett, Naomi R. Wray, Qiongyi Zhao
This study compares three differential expression analysis tools for RNA-Seq data, finding edgeR slightly outperforms others in true positives but may introduce more false positives.
bioRxiv · May 28, 2014Bioinformatics