Using semantic search to find publicly available gene-expression datasets
Grace S. Brown, James Wengler, Aaron Joyce S. Fabelico, Abigail Muir, Anna Tubbs, Amanda Warren, Alexandra N. Millett, Xinrui Xiang Yu, Paul Pavlidis, Sanja Rogić, Stephen Piccolo
This paper evaluates using language models to improve gene-expression dataset discovery in GEO by comparing embeddings to GEO's search engine.
Bioinformatics · Jan 29, 2026Peer-reviewedGenomics