Author
University of British Columbia
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
3 papers
Recent·Most cited
Sanja Rogić, Xinrui Xiang Yu, Brianna Xu…·Paul Pavlidis
The paper assesses challenges in reusing scRNA-seq data from GEO, finding that only ~40% provide usable processed data and <10% include cell-type annotations.
Eric Ching-Pan Chu, Nairuz Elazzabi, Jules Garreau…·Paul Pavlidis
This study evaluates coexpression analysis methods in single-cell and bulk data, finding that xCell provides more replicable and biologically interpretable results than other modes.
Grace S. Brown, James Wengler, Aaron Joyce S. Fabelico…·Stephen Piccolo
This paper evaluates using language models to improve gene-expression dataset discovery in GEO by comparing embeddings to GEO's search engine.