Bento: A toolkit for subcellular analysis of spatial transcriptomics data
Clarence K. Mah, Noorsher Ahmed, Nicole A. Lopez, Dylan C. Lam, Avery Pong, Alexander Monell, Colin Kern, Yuanyuan Han, Gino Prasad, Anthony J. Cesnik, Emma K. Lundberg, Quan Zhu, Hannah K. Carter, Gene Wei-Ming Yeo
Bento enables subcellular analysis of spatial transcriptomics data by defining domains, annotating localization patterns, and quantifying gene colocalization, demonstrating its use on multiple datasets.
Genome biology · Apr 2, 2024Peer-reviewedBioinformatics