Author

Berke Ç. Toptaş

Seven Bridges Genomics (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Organism:human· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Deniz KuraliD· 2 shared Goran RakoceviciD· 2 shared Péter KómáriD· 2 shared Alexey Dolgoborodov· 1 shared Amit JainiD· 1 shared Andrew L. StachyraiD· 1 shared Björn Pollex· 1 shared Gülfem DemiriD· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Deniz KuralORCID

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2 papers

Recent·Most cited

BioinformaticsNature GeneticsPeer-reviewedJan 9, 2019

Fast and Accurate Genomic Analyses using Genome Graphs

Goran Rakocevic, Vladimir Semenyuk, Wan‐Ping Lee…·Deniz Kural

This paper introduces a graph genome reference that improves read alignment and variant calling accuracy compared to traditional haplotype-based methods.

222 citationstop 1%

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedMay 29, 2018

Comparing complex variants in family trios

Berke Ç. Toptaş, Goran Rakočević, Péter Kómár, Deniz Kural

This paper introduces VBT, a tool for identifying Mendelian violations in family trios by solving the 3-way variant matching problem, showing improved accuracy over existing methods.

13 citations

statistical modelvariant calling

𝕏 PostBluesky