omnideconv: a unifying framework for using and benchmarking single-cell-informed deconvolution of bulk RNA-seq data
A. Dietrich, Lorenzo Merotto, K. Pelz, Bernhard Eder, Constantin Zackl, Katharina Reinisch, Frank Edenhofer, Fédérico Marini, Gregor Sturm, Markus List, Francesca Finotello
This paper benchmarks second-generation single-cell-informed deconvolution tools for bulk RNA-seq, revealing performance differences based on data characteristics and providing an ecosystem called omnideconv.
Genome biology · Jan 26, 2026Peer-reviewedBioinformatics