Author

Brydon P. G. Wall

Virginia Commonwealth University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1

Frequent Co-Authors

Joshua Chuck HarrelliD· 2 shared Mikhail G. DozmoroviD· 2 shared Amy L. OlexiD· 1 shared Anthony C. FaberiD· 1 shared Jonathan D. OgataiD· 1 shared Joseph L. McClayiD· 1 shared Konstantinos V. FlorosiD· 1 shared Matthew T. NguyeniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Joshua Chuck HarrellORCID

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2 papers

Recent·Most cited

Beyond Blacklists: A Critical Assessment of Exclusion Set Generation Strategies and Alternative Approaches

Brydon P. G. Wall, Jonathan D. Ogata, Matthew T. Nguyen, Amy L. Olex, Konstantinos V. Floros, Anthony C. Faber, Joseph L. McClay, Joshua Chuck Harrell, Mikhail G. Dozmorov

The paper evaluates exclusion set generation strategies in short-read sequencing, finding that pre-generated Blacklists are hard to reproduce and proposes sponge sequences as an alternative to reduce artifacts.

Bioinformatics · Feb 28, 2026Peer-reviewedBioinformatics

scHiCcompare: an R package for differential analysis of single-cell Hi-C data

My Nguyen, Brydon P. G. Wall, Joshua Chuck Harrell, Mikhail G. Dozmorov

The paper introduces scHiCcompare, an R package for differential analysis of single-cell Hi-C data, improving detection of chromatin interactions across various conditions.

Journal of Molecular Biology · Aug 1, 2025Peer-reviewedBioinformatics