Author

Carl Kingsford

Primary ORCID profile (0000-0002-0118-5516 · 46 papers)Unclaimed ORCID profile · follow to get notified of new preprints

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Carl KingsfordiD46 papers · Carnegie Mellon University

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Organism:human· 1 Assay:Ribo-seq· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Hao Wang· 1 shared Hiren Karathia· 1 shared Joel McManus· 1 shared Michelle Girvan· 1 shared Sridhar Hannenhalli· 1 shared

Activity by Year

2015-2016 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 4 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Hao Wang

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Isoform-level Ribosome Occupancy Estimation Guided by Transcript Abundance with Ribomap

Hao Wang, Joel McManus, Carl Kingsford

The paper introduces Ribomap, a method to improve ribosome occupancy estimation by assigning reads based on transcript abundance, leading to more accurate ribosome profiles.

Bioinformatics · Jun 15, 2016Peer-reviewedBioinformatics

A pathway-centric view of spatial proximity in the 3D nucleome across cell lines

Hiren Karathia, Carl Kingsford, Michelle Girvan, Sridhar Hannenhalli

The paper analyzes spatial proximity of genes in six human cell lines, finding context-specific pathway organization linked to gene function and pathway activity.

bioRxiv · Sep 17, 2015Bioinformatics