Author

Charalampos Koilakos

The University of Texas at Austin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 1 Assay:proteomics· 1 Research Focus:sequence-to-function modeling· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Akshatha NayakiD· 1 shared Alexandros Tzanakakis· 1 shared Aris KaratzikosiD· 1 shared Evangelos Avgoulas· 1 shared Georgios A. PavlopoulosiD· 1 shared Ilias Georgakopoulos‐SoaresiD· 1 shared Ioannis MouratidisiD· 1 shared Kimonas ProvatasiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 36 mutual co-author links

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1 shared paperGenomics

Akshatha NayakORCID

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1 paper

Recent·Most cited

Accelerating Inference in Genomic Foundation Models via Speculative Decoding

Kimonas Provatas, Aris Karatzikos, Charalampos Koilakos, Michail Patsakis, Alexandros Tzanakakis, Akshatha Nayak, Georgios A. Pavlopoulos, Ioannis Mouratidis, Evangelos Avgoulas, Ilias Georgakopoulos‐Soares

This paper introduces speculative decoding to accelerate genomic and proteomic sequence generation using foundation models without compromising prediction quality.

Bioinformatics · Jul 30, 2026Peer-reviewedGenomics